Blender rig stopped working

Hey I made a bird like thing.

It consists of 4 objects,

1eyes ( not rigged )
2body (rigged)
3beak (rigged)
4feat (rigged)

Now last night before calling it a day. I applied the armature modifier on the body object.
So I wanted to create his 1st animation today, and the rig of the body isn’t transforming the body anymore.

All my other rigs still work as intended, just my body rig seems unresponsive. It’s still in its 1st pose position from last night, but thats about it.

Lets see if I can add some screenshots.
http://s24.postimg.org/rkcc7p8lt/untitled.jpg
http://s13.postimg.org/3svbt5vb7/untitled.jpg
http://s17.postimg.org/a3663fpwb/untitled.jpg
http://s24.postimg.org/nzu8tp87l/untitled.jpg

I applied the armature modifier on the body object.
Why did you apply the modifier ?
Go back to a previously saved file before you applied the modifier

Yeah, about this post, I had to reinstall windows the next day. And after that rebuild my PC entirely so this model is lost. Sorry it took me so long to get back on this.