Ways to fix the stick through problem? screen shot!

See the problem. Specifically I want to put this mesh into godot. The body sticks through the clothing. Is there some solution that would allow me to overlap the clothing. Or do I have to replace the body?

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Im not quite sure of godot process, but u can try selecting the pants in edit mode (and select the faces), and ALT+S and move the mouse slightly till it moves away from the legs.