Wondering if anyone has ideas of how to fill these edge loops and make them feel seamless?
Edge > Bridge Edge Loops
that will have no relationship to the bottom edge though
Select all boundary edges and “Face > Grid Fill”
Select the edge then move the cursor along the path and press F.
Edit:
Wait, if it’s only a big hole and are not vertices under the black line, go with the Grid Fill proposed by Hikmet.
Guys, thanks for the suggestions 
Grid fill wasn’t working since the hole doesn’t have the same number of edges that are equally understandable. I was thinking there could be a more automatic method but what I did is copy the edge loop from the bottom up, merge the end vertices and then fill the faces to get the topo that i want.
That’s precisely the approach I would of taken. Select the edge off 8 faces and simply scale to the new position. If you have Mira Tools, you could then use the guide feature to get a nice smooth alignment before filling in the faces. It’s ideal in this sort of situation. In fact, you could of just created a 2-pt edge, used ctrl+r to apply cuts to it, then used mira tools. Either way would be valid.
I’ll give Mira tools a try. Thanks for the tip!