Bad align bones With Empty Groups

I use blender-4.2.0-alpha+main.38fcaf9ab93f-windows.amd64-release
I create an armature and objects and I want to align bones With Empty Groups:
See the project file:

Fixed with deleting all groups, and then re-parent with empty groups again with armature.
Cylinder with Bone and Cylinder.001 with Bone.001
image